“QM/MM方法对柠檬烯环氧化物水解酶的机理研究” 一文在Biochimica et Biophysica Acta-Proteins and Proteomics上发表

候倩倩、盛翔、王金虎、刘永军*、刘成卜. QM/MM study of the mechanism of enzymatic limonene 1,2-epoxide hydrolysis, Biochimica et Biophysica Acta-Proteins and Proteomics.2012,1824:263-268. IF=3.635

Abstract:Limonene 1,2-epoxide hydrolase (LEH) is completely different from those of classic epoxide hydrolases (EHs) which catalyze the hydrolysis of epoxides to vicinal diols. A novel concerted general acid catalysis step involving the Asp101–Arg99–Asp132 triad is proposed to play an important role in the mechanism. Combined quantum-mechanical/molecular-mechanical (QM/MM) calculations gave activation barriers of 16.9 and 25.1 kcal/mol at the B3LYP/6-31G(d,p)//CHARMM level for nucleophilic attack on the more and less substituted epoxide carbons, respectively. Furthermore, the important roles of residues Arg99, Tyr53 and Asn55 on mutated LEH were evaluated by QM/MM-scanned energy mapping. These results may provide an explanation for site-directed mutagenesis.